#1. as Phoneboy wisely said, I believe the sharing of the Hitcount is a known limitation due to sharing of the RuleUID - still verifying for sure.
#2. for the Logs issue: That should work, as the inline layer rules are differentiated by their parent layer.
Example: rule:5.x (or 9.x, like rule:5.1) should work & only show that exact rule's logs.
Are you absolutely sure that don't have any logs matching the 2nd/3rd inline layers of 4.1 & 5.1?
Did you check their Lower pane Logs view (Current Rule) -> No Logs at all.
You're saying that rule:4.1's Current rule shows logs from all 3 layers (including from rules 5.1 & 9.1)?
Can you also share a few examples of logs from the 2nd/3rd inline layers showing matches from these rules? (5.x or 9.x?)
# Privately or publicly here, whichever suits you.
# Feel free to email me directly at: drora@checkpoint.com (Dror Aharony).