exclusion is done in the vpn community, there is a tab service exclusion. There you add ntp and this traffic goes by this community without being enc/decr. Of course you must have a rule on both site to pass this traffic. This is not a change in implied rule. Sometimes I use this function for icmp to proof a customer that the devices has connectivity and the problem is somewhere in the encryption part 😁 .
I never heard of any kind of service route in CP but I believe policy based routing can do the same. In your case the enc/decr traffic goes thru mgmt interface, also the ntp goes thru the same mgmt interface, so routing the traffic to eth1 doesn't make sense, or I miss something in your environment?