Thanks for your time earlier Andy, as you can see no matter what we do it always complains about the implied_rules.def file, even after I replaced it with a clean file from the checkpoint install files.
With the [echo "-force-upgrade-flow" "--ignore_warnings" >> migrate_flags] it does allow the migration tool to complete and creates the import file.
I have imported this to the infinity portal and everything looks fine, except, CME.
CME is enabled but there is nothing listed under the CME Management Name and when I try add an account under the Accounts (Controllers) section, it allows me to enter the details but when I click on Add it has a little think and then reverts to a blank page and never adds the account.
Does anyone have any idea on how to configure CME in the Infinity Portal?